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Main categories with sub-categories for Databases

Select a sub-category to see its list of links, or select a different main category to access further sub-categories and their links

• Databases
• 2DE
• Carbohydrates
• Careers
• General
• Gene
• Genome - animals
• Genome - general
• Genome - microorganisms
• Genome - plants
• Protein
• Proteome
• RNA
• Organizations
• Publications
• Software
• Subject information
• Techniques

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• 2-DE Gel Protein Databases at Harefield
• 2DWG Image Meta-Database - Catalog of 2D PAGE gel images found in Web databases
• ExPASy - SWISS-2DPAGE top page
• ExPASy Proteomics Server
• ExPASy Proteomics Server (US)
• ExPASy: 2DHunt
• Heart-2DPAGE - Berlin
• Partial List of Web 2D Electrophoretic Gel Databases
• WORLD-2DPAGE - 2-D PAGE databases and services
• WORLD-2DPAGE - 2-D PAGE databases and services
• Yeast Protein Map from Bordeaux

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• BCSDB - bacterial carbohydrate structure database
• Carbohydrate Nomenclature
• CAZy - Carbohydrate-Active enZYmes
• EUROCarbDB - European Carbohydrate Databases
• Glycan Database (Consortium for Functional Glycomics)
• Lectines - lectin database (CNRS)
• The GDB:Structures (Database of carbohydrate 3D structures)

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• Career & Employment
• jobs.ac.uk - Search Results -for proteomics
• nature jobs science jobs search -proteomics
• Systems Biology PhD program at Harvard University

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• Abbreviations of Chemical Compounds
• Acronyms and Abbreviations
• ACS - Chemical Abstracts Service
• All the Virology: Table of Contents
• Allergome - a database of allergenic molecules
• ALS database (Amyotrophic lateral sclerosis or Motor Neurone Disease (MND)
• AppleGate Directory Ltd - industry directory
• Bio Netbook -directory of web pages for biology
• BioABACUS Search -abbreviations and acronyms in biotechnology
• Biocatalog - a software directory of general interest in molecular biology and genetics
• Bioinformatics services on the web
• bioinformatik.de -web directory for bioinformatics
• Biological Magnetic Resonance Data Bank
• BioMedCentral - the open access publisher
• Biotechnology Information for Food Safety - Food Allergy
• Chemcyclopedia
• DBCAT - public catalog of databases (Infobiogen)
• Directory of Open Access journals
• Directory of Science - a comprehensive online directory for science
• EBI Database Queries
• EBI Databases
• EBI Downloads -FTP server
• EBI Services
• Entrez PubMed
• ExPASy Proteomics Server
• FishBase (Germany)
• HighWire Press -search engine for publications
• HighWire Press -- Links to more science journals
• HIV Databases
• Labhoo.com - Search Labhoo -the search engine for scientists
• Medweb (Emory University)
• Merriam-Webster Online -dictionary and thesaurus
• Metabolic Database (part of SoyBase)
• MILANO - Microarray Literature-based Annotation
• MINT - Molecular INTeraction Database
• National Library of Medicine knowledge resources
• Periodic Table
• Proteomics courses database
• Protocol online
• PubMed Central - a free archive of life science journals
• Reference data at NPL
• Species 2000 - indexing the world's known species
• Swiss Life Sciences Company Database
• The GRID (General Repository for Interaction Datasets)
• The Molecular Biology Directory
• The Science Citation Index
• The WWW Virtual Library
• TOXNET -Toxicology Data Network (US NLM)
• Tree of Life Web Project Home
• TreeBASE -Database of Phylogenetic Knowledge
• UniProt Knowledgebase (Swiss-Prot/TrEMBL) search by description
• WDCM HOME -World Data Centre for Microorganisms (WDCM)
• Web of Science
• Yeast PathCalling Database

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• ALFRED - The ALlele FREquency Database
• Andogen Receptor Mutations Database Home Page
• Arabidopsis Cytochrome P450s
• Asthma & Allergy Gene Database
• Bacterial Polysaccharide Gene Database
• Basal Transcription Factors
• BCM - Breast Cancer Gene Database
• Bean Genes Homepage
• C.elegans Mitochondrial Directory
• Candida albicans @ NRC-Biotechnology Research Institute.
• Chromosome 9 Resource
• Coffee Genomics: ESTs, Microsatellites, Retro Transposons, Gene clustering
• Collagen Type I & III Mutations
• Cystic Fibrosis Mutation Database
• Cytokine Family Database
• DATABASE OF GENE KNOCKOUTS
• DDBJ (DNA Data Bank of Japan)
• Dictyostelium discoideum cDNA Project
• DNA Patent Database
• DoTS -a human and mouse transcript index
• DPInteract -DNA-protein interactions database
• E.coli database collection - ECDC
• EBI Databases
• EcoCyc: Encyclopedia of Escherichia coli K-12 Genes and Metabolism
• EcoGene Home Page -(University of Miami School of Medicine)
• EMBOSS:Transeq
• Entrez Gene (NCBI)
• European CD40L Defect Database (European Society for Immunodeficiencies)
• ExPASy - SeqAnalRef Sequence analysis bibliographic reference database
• FVII Mutation Database
• Genatlas (Université René Descartes, Paris)
• GeneCards - human genes, their products and their involvement in diseases
• GeneCards® is a database of human genes
• GeneDB (Sanger Insitute)
• GeneDis - Human Genetic Disease Database
• Genome Reviews
• GenWeb interface
• Globin Gene Server home page
• H-InvDB - human gene database (Japan)
• HbVar: A Database of Human Hemoglobin Variants and Thalassemias
• HIV Drug Resistance Database (Stanford University)
• HUGO Gene Nomenclature Committee
• Human Gene Mutation Database (Institute of Medical Genetics, Cardiff)
• IMGT - ImMunoGeneTics information system
• IMT Bioinformatics - ADAbase
• IMT Bioinformatics - BLMbase
• IMT Bioinformatics - BTKbase
• IMT Bioinformatics - CD3Ebase
• IMT Bioinformatics - CD3Gbase
• IMT Bioinformatics - Mutation Databases
• IMT Bioinformatics - NCF1base
• IMT Bioinformatics - NCF2base
• IMT Bioinformatics, auto jump -RAG1base
• IMT Bioinformatics, Databases -RAG2base
• Interferon Stimulated Gene Database
• Keio Mutation Databases - An Integrated Database for Human Disease-associated
• Mammalian Gene Collection
• NCBI RefSeq
• OMIM - Online Mendelian Inheritance in Man
• Plant Gene Register Index
• PTS1 Predictor
• PubGene Gene Database and Tools
• RetNet - Retinal Information Network
• Stanford MicroArray Database
• STD Sequence Databases
• The Androgen Receptor Gene Mutations Database World Wide Web Server
• The EMBL Nucleotide Sequence Database
• The Human Chromosome 1 Home Page
• The Tumor Gene Family Databases
• The Zebrafish Information Network
• Tumor Gene Database
• VectorDB - Molecular Biology Vector Sequence Database
• VMD2 Mutation Database
• X-linked adrenoleukodystrophy Database

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• Animal Lectins
• AnoBase: An Anopheles database
• ARKdb-cat Public Database Browser
• ARKdb-chicken Public Database Browser
• ARKdb-cow Public Database Browser
• ARKdb-deer Public Database Browser
• ARKdb-horse Public Database Browser
• ARKdb-pig Public Database Browser
• ARKdb-salmon Public Database Browser
• ARKdb-sheep Public Database Browser
• ARKdb-tilapia Public Database Browser
• ARKdb-turkey Public Database Browser
• Berkeley Drosophila Genome Project
• BOVMAP DATABASE -Mapping the Bovine Genome
• CGAP -NCI's Cancer Genome Anatomy Project
• Database for chromosome 3 markers and clones (The San Antonio Genome Center)
• dbSNP Home Page -dbSNP - Single Nucleotide Polymorphism (NCBI)
• FlyBase HomePage
• GadFly: Genome Annotation Database of Drosophila (BDGP)
• GeneLoc -integrated map for each human chromosome
• HGVbase - Human Genome Variation Database
• Homo sapiens (UniGene)
• Human (Homo sapiens) -(Ensembl)
• Human Chromosome 1 -(U.S. DoE Human Genome Program)
• Human Chromosome 10 -(U.S. DoE Human Genome Program)
• Human Chromosome 11 -(U.S. DoE Human Genome Program)
• Human Chromosome 12 -(U.S. DoE Human Genome Program)
• Human Chromosome 13 -(U.S. DoE Human Genome Program)
• Human Chromosome 14 -(U.S. DoE Human Genome Program)
• Human Chromosome 15 -(U.S. DoE Human Genome Program)
• Human Chromosome 16 -(U.S. DoE Human Genome Program)
• Human Chromosome 17 -(U.S. DoE Human Genome Program)
• Human Chromosome 18 -(U.S. DoE Human Genome Program)
• Human Chromosome 19 -(U.S. DoE Human Genome Program)
• Human Chromosome 2 -(U.S. DoE Human Genome Program)
• Human Chromosome 20 -(U.S. DoE Human Genome Program)
• Human Chromosome 21 -(U.S. DoE Human Genome Program)
• Human Chromosome 22 -(U.S. DoE Human Genome Program)
• Human Chromosome 3 -(U.S. DoE Human Genome Program)
• Human Chromosome 4 -(U.S. DoE Human Genome Program)
• Human Chromosome 5 -(U.S. DoE Human Genome Program)
• Human Chromosome 6 -(U.S. DoE Human Genome Program)
• Human Chromosome 7 -(U.S. DoE Human Genome Program)
• Human Chromosome 8 -(U.S. DoE Human Genome Program)
• Human Chromosome 9 -(U.S. DoE Human Genome Program)
• Human Chromosome X -(U.S. DoE Human Genome Program)
• Human Chromosome Y -(U.S. DoE Human Genome Program)
• Human Genome Project Primers -(U.S. DoE Human Genome Program)
• Human Genome Project Publications -(U.S. DoE Human Genome Program)
• Medakafish Home Page
• MitoDat - Mendelian Inheritance and the Mitochondrion
• Mosquito Genomics WWW Server
• Mouse Genome Informatics
• Mus musculus (UniGene)
• Rattus norvegicus (UniGene)
• The Dog Genome Project
• The Fugu Genomics Project
• The GDB Human Genome Database
• The Sanger Institute: Human Chromosome 1 Project Overview
• The Sanger Institute: Human Chromosome 10 Project Overview
• The Sanger Institute: Human Chromosome 13
• The Sanger Institute: Human Chromosome 20
• The Sanger Institute: Human Chromosome 22 Home
• The Sanger Institute: Human Chromosome 6 Project Overview
• The Sanger Institute: Human Chromosome 9
• The Sanger Institute: Human X Chromosome Home
• TIGR Human Gene Index
• TIGR Mouse Gene Index
• TIGR Rat Gene Index
• VectorBase -Invertebrate Vectors of Human Pathogens
• WormBase
• Zebrafish (Danio rerio)

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• ANGIS - Australian National Genomic Information Service
• Codon Usage Database
• Ensembl Genome Server
• euGenes - Genomic Information for Eukaryotic Organisms
• Genome Information Broker
• Integr8 - (EBI)
• NCBI RefSeq
• Proteomes and Genomes Fasta -(EBI)
• SBASE Web

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• Saccharomyces cerevisiae Genome Database
• Archaeoglobus fulgidus DSM4304 Information
• Ashbya Genome Database
• Aspergillus nidulans Database
• Aspergillus fumigatus Genome Project
• Bacillus (Geobacillus) stearothermophilus Genome Sequencing - Strain 10
• Bacillus anthracis Ames Genome Sequence
• Borrelia burgdorferi B31 Information
• C. elegans ORFeome cloning project
• Caenorhabditis elegans WWW Server
• CandidaDB Web Server
• CBS Genome Atlas Database - Kingdoms
• ChlamyDB -Online Informatics Resource for Chlamydomonas
• Chlamydia muridarum strain Nigg Information
• Chlamydia pneumoniae AR39 Information
• Colibri Web Server
• Complete genome sequence of Lactobacillus plantarum WCFS1
• Complete Genome Sequencing Project -Francisella tulerensis strain Schu 4
• Comprehensive Microbial Resource (CMR) at TIGR
• Cryptococcus neoformans Genome Project
• CyanoBase: The Genome Database of Cyanobacteria
• DBTBS - database of transcriptional regulation in Bacillus subtilis
• Deinococcus radiodurans R1 Information
• dictyBase Home -Dictyostelium genome information
• Dictyostelium discoideum
• Dictyostelium Genome Analysis
• Escherichia coli K12 MG1655
• Fungal genome databases at MIPS
• Fungal Genome Resource
• Genolevures -Genomic Exploration of the Hemiascomycete Yeasts
• Genome Project of Streptomyces avermitilis_AverGenome
• Genome Reviews -(EBI)
• GiardiaDB - Giardia lamblia Genome
• GOBASE - The Organelle Genome Database
• Haemophilus influenzae KW20 Rd Information
• Halobacterium Genome Project Home Page
• Helicobacter pylori 26695 Information
• Leproma Web Server
• ListiList Web Server
• M. pneumoniae Genome Project
• Malaria Genome Tag Sequencing Projects (University of Florida)
• Methanococcus jannaschii DSM2661 Information
• MIPS Fusarium graminearum Genome Database
• MIPS Neurospora crassa database (MNCDB)
• MIPS Saccharomyces cerevisiae group
• MIPS Ustilago maydis Database
• Mycobacterium tuberculosis CDC1551 Information
• Mycoplasma genitalium G-37 Information
• MypuList Web Server
• Neisseria meningitidis MC58 Information
• Nitrosomonas europaea
• Parasites (EBI)
• PlasmoDB: The Plasmodium Genome Resource
• Prochlorococcus marinus MIT9313
• PyloriGene Web Server
• Ralstonia solanacearum
• Rhodobacter sphaeroides genome project at University of Texas
• Rhodopseudomonas palustris
• SubtiList Web Server
• The Candida Genome Database
• the dictyostelium genome sequencing project at baylor college of medicine
• The E. coli Index (part of the WWW Virtual Library)
• The Neurospora Genome Project: Home Page
• The Physical Map of Candida Albicans
• The Plasmodium falciparum Genome Database (PFDB)
• The Sanger Institute: Bordetella
• The Sanger Institute: C. elegans Project
• The Sanger Institute: C. michiganensis
• The Sanger Institute: C.difficile
• The Sanger Institute: C.diphtheriae
• The Sanger Institute: C.jejuni
• The Sanger Institute: E. ruminantium
• The Sanger Institute: Fungi Sequencing Projects
• The Sanger Institute: Leishmania major Genome Project
• The Sanger Institute: M.bovis
• The Sanger Institute: M.tuberculosis
• The Sanger Institute: Mycobacterium leprae genome project
• The Sanger Institute: Neisseria meningitidis
• The Sanger Institute: Plasmodium falciparum Genome Project
• The Sanger Institute: S. coelicolor Genome Project
• The Sanger Institute: S. pyogenes
• The Sanger Institute: S. suis
• The Sanger Institute: S. uberis
• The Sanger Institute: S.pombe
• The Sanger Institute: S.typhi
• The Sanger Institute: T. whipplei
• The Sanger Institute: Trypanosoma brucei Genome Project
• The Sanger Institute: Yersinia enterocolitica
• The Sanger Institute: Yersinia pestis
• Thermotoga maritima MSB8 Information
• Tobamoviruses
• ToxoDB : The Toxoplasma Genome Resource - Data Release Policy
• Treponema pallidum Nichols Information
• TRIPLES — a database of TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces
• Trypanosoma cruzi
• TubercuList Web Server
• Ureaplasma urealyticum Genome
• Vibrio cholerae El Tor N16961 Information
• Who/TDR Malaria Database
• Yeast Comparative Genomics

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• CottonDB Home Page
• Dendrome - a forest tree genome database
• MIPS Arabidopsis thaliana database
• National BioResource Project (NBRP)::Oryzabase
• NSF Potato Functional Genomics
• Plant Genome Project (Kazusa DNA Research Institute)
• Rice Genome Project (University of Wisconsin Madison)
• Rice-research.org
• SorghumDB Home Page
• SoyBase
• The TIGR Arabidopsis thaliana Database
• TIGR Rice Genome Annotation
• TIGR Soybean Gene Index
• TIGR Tomato Gene Index

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• 2-DE Gel Protein Databases at Harefield
• Accession numbers for FAD-dependent pyridine nucleotide oxidoreductases
• Accession numbers for flavodoxins
• Albumin
• Aminoacyl-tRNA synthetases database (AARS)
• Antibody Resource Page: Find Monoclonal and Polyclonal Antibodies
• Arabidopsis Glycosyltransferase Family 1
• Arabidopsis Membrane Protein Library
• AraC/XylS - helix-turn-helix transcription factors
• CBS domain - Cystathionine Beta Synthase
• Chaperonin Home Page
• Coffee Genomics: ESTs, Microsatellites, Retro Transposons, Gene clustering
• Computer Analysis of Phytochrome Sequences (IMB Jena) - Multiple Alignment
• cpnDB: A Chaperonin Database
• CSDBase -- An Interactive Database for Cold Shock Domain (CSD) Containing Proteins and the Bacterial Cold Shock Response
• Cytochrome P450 Homepage
• Delta Mass - database of protein post translational modifications (ABRF)
• DExH/PROTEIN DATABASE
• DIP - Database of Interacting Proteins
• DIP - Database of Interacting Proteins
• DnaB Helicase
• DOLOP - A Database of Bacterial Lipoproteins
• DPInteract -DNA-protein interactions database
• EBI Databases
• ECCE - The E. coli Cell Envelope Protein Data Collection
• euHCVdb®: The European HCV Database Home Page
• ExPASy - ENZYME -Enzyme nomenclature database
• ExPASy - PROSITE
• ExPASy - SeqAnalRef Sequence analysis bibliographic reference database
• ExPASy Proteomics Server
• ExPASy Proteomics Server (US)
• Fasta similarity searching against protein databases
• GnRH Family of Proteins (by Jonathan A. Eisen)
• GPI Modification Site Prediction
• HIV Structural Database and Chem-BLAST
• HLA Peptide Binding Predictions
• HUGE protein database
• Human ABC-Transporters
• human Glucose-6-phosphate dehydrogenase (G6PD)
• Human Ornithine Transcarbamylase (OTCase) website
• IntAct - protein interactions
• International Protein Index (EBI)
• InterPro - protein families
• InterProScan -InterPro sequence search
• IPI - International Protein Index (EBI)
• Ligand-Gated Ion Channel Database
• MDB (Main Page) - Metalloprotein Site Database & Browser, TSRI
• MEROPS - the Peptidase Database
• Molecules to go - NIH search of PDB
• MRC Haemostasis and Thrombosis Databases
• MutaProt v 2.0 - Comparison of PDB files which differ by point mutations
• MyHits - protein domain database at SIB
• NCBI RefSeq
• Neurotrophic Factors
• NMT - The MYR Predictor - MyristoylCoA:Protein N-Myristoyltransferase
• Nomenclature and Symbolism for Amino Acids and Peptides
• Nuclear Protein Database (NPD)
• P-type ATPase database
• Pfam - Protein families database of alignments and HMMs
• Phospho.ELM Search -a database of S/T/Y phosphorylation sites
• Phosphodiesterase
• PORTER -Protein Secondary Structure Prediction (University College Dublin )
• PRIDE -PRoteomics IDEntifications database
• PROLYSIS -a protease and protease inhibitor Web server
• Protein Topology
• Proteoglycans
• Rankpep: Prediction of peptide binding to MHC molecules
• Relibase - A program for searching protein-ligand databases.
• RESID - Database of Protein Modifications
• SCOP - Structural Classification of Proteins
• SCOP: Structural Classification of Proteins
• SDAP : Structural Database of Allergenic Proteins
• Sequences of gene encoded antimicrobial peptides and proteins
• Signal Recognition Particle Database (University of Texas)
• Swiss-Prot TrEMBL
• The Connexins and deafness
• The human olfactory receptor data exploratorium
• The Mutator Family of Transposases (by Jonathan A. Eisen)
• The MutS Family of Proteins (by Jonathan A. Eisen)
• The WD repeat Family of Proteins
• The Wnt Homepage
• TIGRFAMs Home Page -protein families based on Hidden Markov Models
• Yeast GFP Fusion Localization Database -- yeastgfp.ucsf.edu
• Yeast Membrane Protein Library
• Yeast Transport Protein database

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• ExPASy Proteomics Server
• ExPASy Proteomics Server (US)
• Integr8 - (EBI)
• Mitochondrial Proteome
• Proteomes and Genomes Fasta

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• 5S rRNA data bank browser
• Compilation of tRNA sequences and sequences of tRNA genes
• gRNA - database
• RAD - RNA Abundance Database
• RNA Editing Web Site
• RNA families database of alignments and CMs
• RNABase The RNA Structure Database
• Signal Recognition Particle Database (University of Texas)
• siRNA Database and Resources for RNA Interference Studies
• Small RNA database (Baylor College of Medicine)
• Structural Classification of RNA (SCOR)
• the European Ribosomal RNA database
• The RNA Modification Database (University of Utah)
• The RNAi Database (C. elegans.
• The RNase P Database (James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:3
• tmRDB (tmRNA Database)
• Yeast snoRNA database

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